Publications
Ainoleena Turku; Hannes Schihada; Pawel Kozielewicz; Carl-Fredrik Bowin; Gunnar Schulte. 2021. Residue 6.43 defines receptor function in class F GPCRs. Nature communications 12 (1). doi: 10.1038/s41467-021-24004-z. (https://doi.org/10.1038/s41467-021-24004-z)
| Receptor | Uniprot entry name | Uniprot ID | Family | Class | PDB ID | State | Species | Model type | Ligand(s) | Model name | Num. of atoms | Membrane composition | Accum. sim. time (µs) | Software | Force field | Submitted by | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| View | Frizzled-6 | fzd6_human | O60353 | Frizzled | F | Homology model | Homo sapiens | Apoform | Frizzled-6 modeled from human Smoothened receptor | 149361 | POPC | 1.25 | GROMACS 2019.2 | CHARMM36, GAFF2 CHARMM36, GAFF2 | Schulte lab, Karolinska Institutet | Report | ||
| View | Frizzled-6 | fzd6_human | O60353 | Frizzled | F | Homology model | Homo sapiens | Apoform | Frizzled-6 | 149367 | POPC | 1.25 | GROMACS 2019.2 | CHARMM36, GAFF2 CHARMM36, GAFF2 | Schulte lab, Karolinska Institutet | Report | ||
| View | Frizzled-6 | fzd6_human | O60353 | Frizzled | F | Homology model | Homo sapiens | Apoform | Frizzled-6 | 149297 | POPC | 0.50 | GROMACS 2019.2 | CHARMM36, GAFF2 CHARMM36, GAFF2 | Schulte lab, Karolinska Institutet | Report | ||
| View | Frizzled-6 | gnas2_human fzd6_human | O60353 P63092 | Frizzled | F | Homology model | Homo sapiens | Complex | Frizzled-6 in complex wih miniGs/i | 183402 | POPC | 0.55 | GROMACS 2019.2 | CHARMM36, GAFF2 CHARMM36, GAFF2 | Schulte lab, Karolinska Institutet | Report | ||
| View | Smoothened homolog | smo_human | Q99835 | Frizzled | F | 6OT0 | Active | Homo sapiens | Apoform | human Smoothened receptor | 156405 | POPC | 1.25 | GROMACS 2019.2 | CHARMM36, GAFF2 CHARMM36, GAFF2 | Schulte lab, Karolinska Institutet | Report | |
| View | Smoothened homolog | smo_human | Q99835 | Frizzled | F | 6OT0 | Active | Homo sapiens | Apoform | uman Smoothened receptor | 156399 | POPC | 1.25 | GROMACS 2019.2 | CHARMM36, GAFF2 CHARMM36, GAFF2 | Schulte lab, Karolinska Institutet | Report |
