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Simulation report

Technical information

General information

Name: Adenosine receptor a2a/soluble cytochrome b562 chimera in complex with pwtbzoiuwzopft-uhfffaoysa-n

PDB id: 5K2C

Activation state: Inactive

Description: Classical unbiased (NVT ensemble) complex flexibility assay.

Submitted by: GPCRmd community

System setup

Solvent type: TIP3P

Membrane type: Homogeneous

Membrane composition: POPC (98.4%), CLR (1.6%)

Ionic composition: Sodium ion (161 mM), Chloride (199 mM)

Number of molecules:

Water: 17910

POPC: 188

Chloride: 64

Sodium ion: 52

Cholesterol: 3

ZM241385: 1

Adenosine receptor A2a: 1

Total number of atoms: 84356

Simulation details

Software and version: ACEMD3, GPUGRID

Forcefield and version: CHARMM, c36 Jul 2020

Time step : 4.0 fs

Delta : 0.2 ns

Replicates: 3

Accumulated simulation time: 1.5 µs

Additonal parameters: Available at "Simulation protocol & starting files"

Simulation components

Ligands

Orthosteric ligand(s)

Zm241385

(1 molecule)


Receptor

Visualization and trajectory sharing powered by NGL viewer and MDSrv

Open with GPCRmd Workbench

Mutations

No mutations found



Other molecules



Water

Specific State ID: 5151

(17910 molecules)

H2O


POPC

Specific State ID: 5152

(188 molecules)


Sodium ion

Specific State ID: 5153

(52 molecules)

Na+


Chloride

Specific State ID: 5154

(64 molecules)

Cl-


ZM241385 (orthosteric lig.)

Specific State ID: 5177

(1 molecule)


Cholesterol

Specific State ID: 5166

(3 molecules)


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