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Simulation report

Technical information

General information

Name: Neurotensin receptor type 1 in complex with glycine

PDB id: 4BUO

Activation state: Inactive

Description: Classical unbiased (NVT ensemble) complex flexibility assay.

Submitted by: GPCRmd community

System setup

Solvent type: TIP3P

Membrane type: Homogeneous

Membrane composition: POPC

Ionic composition: Sodium ion (158 mM), Chloride (193 mM)

Number of molecules:

Water: 19332

POPC: 196

Chloride: 67

Sodium ion: 55

Glycine: 15

Neurotensin receptor type 1: 1

Total number of atoms: 89811

Simulation details

Software and version: ACEMD3, GPUGRID

Forcefield and version: CHARMM, c36 Jul 2020

Time step : 4.0 fs

Delta : 0.2 ns

Replicates: 3

Accumulated simulation time: 1.5 µs

Additonal parameters: Available at "Simulation protocol & starting files"

Simulation components

Ligands

Orthosteric ligand(s)

Glycine

(15 molecules)


Receptor

Visualization and trajectory sharing powered by NGL viewer and MDSrv

Open with GPCRmd Workbench

Mutations

No mutations found



Other molecules



Water

Specific State ID: 5151

(19332 molecules)

H2O


POPC

Specific State ID: 5152

(196 molecules)


Sodium ion

Specific State ID: 5153

(55 molecules)

Na+


Chloride

Specific State ID: 5154

(67 molecules)

Cl-


Glycine (orthosteric lig.)

Specific State ID: 5289

(15 molecules)


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