Free cookie consent management tool by TermsFeed GPCRmd
× Due to a recent server update, this page will be slow for the next 1-2 hours. We apologize for any inconvenience this may cause.

Simulation report

Technical information

General information

Name: Adenosine receptor a2a (apoform)

PDB id: 5UVI

Activation state: Inactive

Description: Classical unbiased (NVT ensemble) complex flexibility assay.

Submitted by: GPCRmd community

System setup

Solvent type: TIP3P

Membrane type: Homogeneous

Membrane composition: POPC (100.0%), CLR (0.0%)

Ionic composition: Sodium ion (156 mM), Chloride (191 mM)

Number of molecules:

Sodium ion: 53

Chloride: 65

POPC: 211

ZM241385:

Cholesterol:

Water: 18867

Adenosine receptor A2a: 1

Total number of atoms: 90049

Simulation details

Software and version: ACEMD3, GPUGRID

Forcefield and version: CHARMM, c36 Jul 2020

Time step : 4.0 fs

Delta : 0.2 ns

Replicates: 3

Accumulated simulation time: 1.5 µs

Additonal parameters: Available at "Simulation protocol & starting files"

Simulation components

Ligands

Orthosteric ligand(s)

Zm241385

(0 molecules)


Receptor

Visualization and trajectory sharing powered by NGL viewer and MDSrv

Open with GPCRmd Workbench

Mutations

No mutations found



Other molecules



Sodium ion

Specific State ID: 5153

(53 molecules)

Na+


Chloride

Specific State ID: 5154

(65 molecules)

Cl-


POPC

Specific State ID: 5152

(211 molecules)


ZM241385 (orthosteric lig.)

Specific State ID: 5177

Water

Specific State ID: 5151

(18867 molecules)

H2O


PARTNER SERVERS

GPCRdb

GPCR-ModSim

GPCRM

NMRlipids

HomolWat

Hybrid MM/CG Webserver

CONTACT & LINKS

Documentation

Cite us

Privacy policy

Cookies policy

Disclaimer

Terms & Conditions

SUPPORTED BY

ERNEST (COST Action CA18133)

GLISTEN (COST Action CM1207)