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Simulation report

Technical information

General information

Name: Glucagon receptor in complex with dntvjemghbiumw-ibgzpjmesa-n

PDB id: 5EE7

Activation state: Inactive

Description: Classical unbiased (NVT ensemble) complex flexibility assay.

Submitted by: GPCRmd community

System setup

Solvent type: TIP3P

Membrane type: Homogeneous

Membrane composition: POPC

Ionic composition: Sodium ion (157 mM), Chloride (176 mM)

Number of molecules:

Water: 23048

POPC: 305

Chloride: 73

Sodium ion: 65

CHEMBL1933349: 1

Glucagon receptor: 1

Total number of atoms: 115270

Simulation details

Software and version: ACEMD3, GPUGRID

Forcefield and version: CHARMM, c36 Jul 2020

Time step : 4.0 fs

Delta : 0.2 ns

Replicates: 3

Accumulated simulation time: 1.5 µs

Additonal parameters: Available at "Simulation protocol & starting files"

Simulation components

Ligands

Orthosteric ligand(s)

Chembl1933349

(1 molecule)


Receptor

PDB id: 5EE7
Glucagon receptor

Visualization and trajectory sharing powered by NGL viewer and MDSrv

Open with GPCRmd Workbench

Mutations

No mutations found



Other molecules



Sodium ion

Specific State ID: 5153

(65 molecules)

Na+


Chloride

Specific State ID: 5154

(73 molecules)

Cl-


POPC

Specific State ID: 5152

(305 molecules)


Water

Specific State ID: 5151

(23048 molecules)

H2O


CHEMBL1933349 (orthosteric lig.)

Specific State ID: 5242

(1 molecule)


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