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Simulation report

Technical information

General information

Name: Pafr-ligamd

PDB id: 8XYD

Description: -

Submitted by: Xinheng He, Shanghai Institute of Materia Medica, Chinese Academy of Science

System setup

Solvent type: TIP3P

Membrane type: Homogeneous

Number of molecules:

PAFR: 1

Total number of atoms: 5981

Simulation details

Software and version: Amber, 20

Forcefield and version: CHARMM36m, CHARMM36m

Time step : 2.0 fs

Delta : 0.15 ns

Replicates: 5

Accumulated simulation time: 4.965 µs

Additonal parameters: Available at "Simulation protocol & starting files"

Simulation components

Ligands

Peptidic ligand(s)

PAFR

(1 molecule)

Receptor

PDB id: 8XYD

Visualization and trajectory sharing powered by NGL viewer and MDSrv

Open with GPCRmd Workbench

Mutations

No mutations found


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