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Simulation report

Technical information

General information

Name: 6wgt_complex

PDB id: 6WGT

Activation state: Inactive

Description: Classical unbiased (NVT ensemble) complex flexibility assay.

Submitted by: GPCRmd community

System setup

Solvent type: TIP3P

Membrane type: Homogeneous

Membrane composition: POPC

Ionic composition: Sodium ion (157 mM), Chloride (183 mM)

Number of molecules:

Water: 21885

POPC: 225

Chloride: 72

Sodium ion: 62

Haze: 1

5-hydroxytryptamine receptor 2A: 1

Total number of atoms: 101012

Simulation details

Software and version: ACEMD3, GPUGRID

Forcefield and version: CHARMM, c36 Jul 2020

Time step : 4.0 fs

Delta : 0.2 ns

Replicates: 3

Accumulated simulation time: 1.5 µs

Additonal parameters: Available at "Simulation protocol & starting files"

Simulation components

Ligands

Orthosteric ligand(s)

Haze

(1 molecule)


Receptor

Visualization and trajectory sharing powered by NGL viewer and MDSrv

Open with GPCRmd Workbench

Mutations

No mutations found



Other molecules



Water

Specific State ID: 5151

(21885 molecules)

H2O


POPC

Specific State ID: 5152

(225 molecules)


Sodium ion

Specific State ID: 5153

(62 molecules)

Na+


Chloride

Specific State ID: 5154

(72 molecules)

Cl-


Haze (orthosteric lig.)

Specific State ID: 5255

(1 molecule)


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