SCoV2-MD

Click on a protein to find MD simulations

Here you can find simulations of multiple SARS-CoV-2 proteins. Click on one viral protein to browse them.

Alpha (B.1.1.7)

Beta (B.1.351)

Gamma (P.1)

Delta (B.1.617.2)

Omicron (B.1.1.529)

Virus evolution

Phylogenetic tree of genomes sampled between December 2019 and June 2021. Click on one genome to see the details and map the corresponding mutations on a structure.

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Data obtained from GISAID.

Hadfield et al, Nextstrain: real-time tracking of pathogen evolution, Bioinformatics (2018)
Sagulenko et al, TreeTime: Maximum-likelihood phylodynamic analysis, Virus Evolution (2017)

SCoV2-MD

Share, visualize and analyze MD data of SARS-CoV-2 related proteins.